I was very pleasantly surprised with a tool called Boot-Repair provided by Ubuntu. If you end up hosing up the MBR of your drive, Boot-Repair will come to the rescue:
http://help.ubuntu.com/community/Boot-Repair
Will re-install grub for you on your Linux partition. It really saved me hours of researching and troubleshooting. Thank you Ubuntu developers and Canonical for making such great contributions to open source.
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